Hey Edfaedos. Welcome to the depot

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Firstly RevG and RevC refer to (or should refer to) the main board revision. The EPROM version v2.00 and v2.01 are firmware and factory patches and can be installed in any MP-1. I don't recall what the difference is between v2.00 and 2.01 EPROMs. The ability to dump and load sysex was introduced in v2.00 which also included a bunch more factory presets, some for the (then newly released) vintage split stacks (60 - 69) and equivalent for original split stacks (30 - 39) plus a couple more new patches (40 - 59) for original split stacks.
Not to be confused with MP-1 early versions (characterised by the top switch (line or inst level output), line level rear jack and initially v1.38 EPROM) and the later MP-1 version which included 2.00 EPROM and inst level rear jack and no top switch. Within both early and later MP-1s the main board had various revisions.
The last EPROM ADA released was v2.01, again I don't know what changed between 2.00 and 2.01 (Harley??, MJMP?? any ideas??) but the sysex stuff and factory presets was/should be the same. There are some notes (see attached) regarding connecting to PC and avoiding MIDI feedback but I don't think that's your issue

. If you swap the EPROMs over in each unit does it still have the same issue?? (something to try). If you need new 2.01 EPROMS (http://www.marshalljmpmodshop.net/miscellaneous_parts_and_replacement_tubes.htm)
As far as I know there shouldn't be any difference in the sysex dumps from v2.00 and 2.01. Also you should be able to read the files with a text editor. When I first did a dump ages ago from (my then) MP-1 I could open the file in Notepad and see the settings.